Gromacs - Spoken Tutorials - Assignments
Funded by the MoE, Government of India.
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For assignment activity, please do the following.


1. Open the log file and go through the details.

2. Plot RMSD of trace (C-alpha) atoms only.

3. Create Ramachandran plot of the lowest and highest energy structure.

Using the gmx energy command, 

4. Plot solvent accessible surface area (SASA).

5. Explore gmxcheck, and ngmx commands.