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Blast - English

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Biopython Tutorials - English

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Outline:
Run BLAST for the query sequence over internet through NCBI BLAST service.
Use qblast function in NCBIWWW module to run blast for a nucleotide sequence.
Save the output xml file in home folder.
Parse the BLAST output (xml) file using functions available in Bio.Blast.Record module.

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Duration:	00:07:49	Size:	3.1 MB

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Pre-requisite

Writing Sequence Files

Assignment

Code files

BLAST-Codefiles/
BLAST-Codefiles/blast.py
BLAST-Codefiles/blas-prot.py
BLAST-Codefiles/Blast-fasta.py
BLAST-Codefiles/Blast-seq-rec.py

Script

Timed Script

Slides

BLAST Slides/
BLAST Slides/blas-prot.py
BLAST Slides/st-logo-new.png
BLAST Slides/Blast.tex
BLAST Slides/Blast.pdf
BLAST Slides/Blast-fasta.py
BLAST Slides/Blast-seq-rec.py

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