Blast - English

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  1. Instruction Sheet
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Outline:
Run BLAST for the query sequence over internet through NCBI BLAST service.
Use qblast function in NCBIWWW module to run blast for a nucleotide sequence.
Save the output xml file in home folder.
Parse the BLAST output (xml) file using functions available in Bio.Blast.Record module.
Width:832 Height:624
Duration:00:07:49 Size:3.1 MB

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Pre-requisite

Writing Sequence Files

  Assignment

Code files

  • BLAST-Codefiles/
  • BLAST-Codefiles/blast.py
  • BLAST-Codefiles/blas-prot.py
  • BLAST-Codefiles/Blast-fasta.py
  • BLAST-Codefiles/Blast-seq-rec.py

Script

Timed Script

Slides

  • BLAST Slides/
  • BLAST Slides/blas-prot.py
  • BLAST Slides/st-logo-new.png
  • BLAST Slides/Blast.tex
  • BLAST Slides/Blast.pdf
  • BLAST Slides/Blast-fasta.py
  • BLAST Slides/Blast-seq-rec.py