Parsing Data - English
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ERROR IN THE PRINT COMMAND
Enable to parse the files.Error in the following command: for seq_record in SeqIO.parse("sequence.fasta","fasta"): ...: print(seq_record.id)
05-06M 10-20S sakshi.sharma06@svkmmumbai.onmicrosoft.com
Answer last updated on: July 22, 2024, 4:40 p.m.
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Can't parse files in biopython
The parse files doesn't open even if the file name is same and saved in dekstop,documents and python program files.
05-06M 0-10S bansari.desai04@svkmmumbai.onmicrosoft.com
Answer last updated on: July 22, 2024, 4:37 p.m.
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Error showing in parsing data
In the first 2 videos of biopython I didn't face any error. But in the 3rd video of parsing data the commands are not working and showing error. Could you please help me to resolve this problem? Thank you
04-05M 20-30S 600787345@svkmmumbai.onmicrosoft.com
Answer last updated on: July 22, 2024, 4:37 p.m.
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Print command error
In [2]: from Bio import SeqIOIn [3]: for seq_record in SeqIO.parse("sequence.fasta", "fasta"): ...: print(seq_record.id)------------------------------------------------------------IndentationError: expected an indented block (<ipython console>, line 2)In [4]:
05-06M 40-50S bharvi.baria005@mithibai.edu.in
Answer last updated on: July 22, 2024, 4:36 p.m.
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ERROR IN THE PRINT COMMAND
error in the following command: print(seq_record.id)
05-06M 10-20S salem.khan19@svkmmumbai.onmicrosoft.com
Answer last updated on: April 22, 2024, 1:11 p.m.
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text editor
How to open text file in windows os? instead of text editor shall i use loadtxt command
02-03M 0-10S NandhiniMariyappan
Answer last updated on: May 1, 2020, 1:48 p.m.
Questions posted on ST Forums:
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Outline:
Download FASTA and GenBank files from NCBI database website. Parse data files using functions in Bio.SeqIO module. Use parse function (Bio.SeqIO. Parse()) to extract information such as sequence id's, sequence contained in the file and length of the sequence. Use read function (Bio.SeqIO.read()) to read contents from a data file with a single record.
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