In [2]: from Bio import SeqIOIn [3]: for seq_record in SeqIO.parse("sequence.fasta", "fasta"): ...: print(seq_record.id)------------------------------------------------------------IndentationError: expected an indented block (<ipython console>, line 2)In [4]:
In the first 2 videos of biopython I didn't face any error. But in the 3rd video of parsing data the commands are not working and showing error. Could you please help me to resolve this problem? Thank you
The parse files doesn't open even if the file name is same and saved in dekstop,documents and python program files.
Enable to parse the files.Error in the following command: for seq_record in SeqIO.parse("sequence.fasta","fasta"): ...: print(seq_record.id)
error in the following command: print(seq_record.id)
How to open text file in windows os? instead of text editor shall i use loadtxt command
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Outline:Download FASTA and GenBank files from NCBI database website. Parse data files using functions in Bio.SeqIO module. Use parse function (Bio.SeqIO. Parse()) to extract information such as sequence id's, sequence contained in the file and length of the sequence. Use read function (Bio.SeqIO.read()) to read contents from a data file with a single record.
Download FASTA and GenBank files from NCBI database website. Parse data files using functions in Bio.SeqIO module. Use parse function (Bio.SeqIO. Parse()) to extract information such as sequence id's, sequence contained in the file and length of the sequence. Use read function (Bio.SeqIO.read()) to read contents from a data file with a single record.
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