Proteins and Macromolecules - English
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the outsider oxygen molecules of protein does not take hydrogen molecule
whenever i try to fix hydrogen and minimize, hydrogen adds only in the backbone of protein structure. the oxygen molecules that present beside the protein does not get the hydrogen molecule. i tried it other pdb files, but there is same issue. is it a malfunction? give me suitable solution.
05-06M 30-40S riteshchowdhury
Answer last updated on: Oct. 4, 2023, 12:23 p.m.
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Hydrogen is not getting added
In Jmol version 14.31.2, hydrogen is not getting added after clicking on “add hydrogen” option from the model kit menu. How to add the hydrogen atoms to the molecule?
05-06M 20-30S hbammkanti
Answer last updated on: Sept. 3, 2020, 2:42 p.m.
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Code file of Human Insulin
In Jmol version 14.31.2, the code file provided for human insulin opens in cartoon style. How do I get the same display style as shown in video?
05-06M 0-10S hbammkanti
Answer last updated on: Sept. 3, 2020, 2:38 p.m.
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1Overview of Jmol Application
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2Introduction to Jmol Application
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3Create and edit molecular models
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4Modify Display and View
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5Measurements and Labeling
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6Interchange the Element in the 3D Model
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7Script Console and Script Commands
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8Display Lone Pair of Electrons
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9Surfaces and Orbitals
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10Structures from Database
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11Crystal Structure and Unit Cell
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12Bond Rotation in Jmol
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13Superimposing Structures
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Proteins and Macromolecules
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153D Models of Enzymes
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16Symmetry and Point Groups
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17Animation using Script Commands
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18Simulated NMR Spectrum using Jmol
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19Creating a Basic JSmol Integrated Web Page
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20Editing the JSmol Integrated Web Page
Questions posted on ST Forums:
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Outline:
Load structures of proteins from Protein Data Bank (PDB). Download .pdb files from the database. View the 3D structure of Insulin using PDB code (4EX1). View the structure without water molecules. Modify the display of secondary structure. Highlight hydrogen bonds and disulfide bonds
Width: | 816 | Height: | 608 |
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Duration: | 00:11:38 | Size: | 6.3 MB |
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