Proteins and Macromolecules - English
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- Jmol Application Tutorials - English
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the outsider oxygen molecules of protein does not take hydrogen molecule
whenever i try to fix hydrogen and minimize, hydrogen adds only in the backbone of protein structure. the oxygen molecules that present beside the protein does not get the hydrogen molecule. i tried it other pdb files, but there is same issue. is it a malfunction? give me suitable solution.
05-06M 30-40S riteshchowdhury
Answer last updated on: Oct. 4, 2023, 12:23 p.m.
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Hydrogen is not getting added
In Jmol version 14.31.2, hydrogen is not getting added after clicking on “add hydrogen” option from the model kit menu. How to add the hydrogen atoms to the molecule?
05-06M 20-30S hbammkanti
Answer last updated on: Sept. 3, 2020, 2:42 p.m.
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Code file of Human Insulin
In Jmol version 14.31.2, the code file provided for human insulin opens in cartoon style. How do I get the same display style as shown in video?
05-06M 0-10S hbammkanti
Answer last updated on: Sept. 3, 2020, 2:38 p.m.
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1Overview of Jmol Application
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2Introduction to Jmol Application
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3Create and edit molecular models
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4Modify Display and View
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5Measurements and Labeling
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6Script Console and Script Commands
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7Surfaces and Orbitals
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8Structures from Database
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9Crystal Structure and Unit Cell
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10Bond Rotation in Jmol
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11Superimposing Structures
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Proteins and Macromolecules
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133D Models of Enzymes
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14Symmetry and Point Groups
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15Animation using Script Commands
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16Simulated NMR Spectrum using Jmol
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17Creating a Basic JSmol Integrated Web Page
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18Editing the JSmol Integrated Web Page
Questions posted on ST Forums:
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Outline:
Load structures of proteins from Protein Data Bank (PDB). Download .pdb files from the database. View the 3D structure of Insulin using PDB code (4EX1). View the structure without water molecules. Modify the display of secondary structure. Highlight hydrogen bonds and disulfide bonds
Width: | 816 | Height: | 608 |
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Duration: | 00:11:38 | Size: | 6.3 MB |
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