Proteins and Macromolecules - Khasi
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the outsider oxygen molecules of protein does not take hydrogen molecule
whenever i try to fix hydrogen and minimize, hydrogen adds only in the backbone of protein structure. the oxygen molecules that present beside the protein does not get the hydrogen molecule. i tried it other pdb files, but there is same issue. is it a malfunction? give me suitable solution.
05-06M 30-40S riteshchowdhury
Answer last updated on: Oct. 4, 2023, 12:23 p.m.
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Hydrogen is not getting added
In Jmol version 14.31.2, hydrogen is not getting added after clicking on “add hydrogen” option from the model kit menu. How to add the hydrogen atoms to the molecule?
05-06M 20-30S hbammkanti
Answer last updated on: Sept. 3, 2020, 2:42 p.m.
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Code file of Human Insulin
In Jmol version 14.31.2, the code file provided for human insulin opens in cartoon style. How do I get the same display style as shown in video?
05-06M 0-10S hbammkanti
Answer last updated on: Sept. 3, 2020, 2:38 p.m.
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1
Introduction to Jmol Application -
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Create and edit molecular models -
3
Modify Display and View -
4
Measurements and Labeling -
5
Script Console and Script Commands -
6
Surfaces and Orbitals -
7
Structures from Database -
8
Crystal Structure and Unit Cell -
Proteins and Macromolecules -
10
3D Models of Enzymes -
11
Symmetry and Point Groups -
12
Animation using Script Commands
Questions posted on ST Forums:
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Outline:
• Load ki structures jong ki proteins naka Protein Data Bank (PDB). • Download ki .pdb files naka database. • Peit ïaka 3D structure jong u Insulin pyndonkam u PDB code (4EX1). • Peit ïaka the structure ba khlem ki water molecules. • Pynpher ïaka display jong ka secondary structure. • Highlight ïaki hydrogen bonds bad ki disulfide bonds
| Width: | 816 | Height: | 608 |
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| Duration: | 00:11:38 | Size: | 6 MB |
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