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Structures from Database - English

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Jmol Application Tutorials - English

Questions posted on ST Forums:

Code file Adenosine.mol and Alpha-D-glucopyranose.mol
The code files doesn't have the hydrogen molecules as shown in video. How can I add them?
07-08M 10-20S hbammkanti

Answer last updated on: July 14, 2022, 9:07 p.m.
How to select single atom?
Everything got selected when I clicked on select atom set option. How do I select the atoms as shown in video?I am using Jmol version 14.31.2
04-05M 10-20S hbammkanti

Answer last updated on: Sept. 2, 2020, 6:27 p.m.

21

Outline:

Load chemical structures from chemical structure database (PubChem). Load structure of Phenol and convert it to Para-amino Phenol. Load structure of cholesterol and highlight the double-bond and side-chain. Convert 2D structures drawn in GChemPaint to 3D models in Jmol. Convert 2D structures of Alanine, Adenosine, Alpha-d-glucopyranose to 3D models in Jmol.

Width:	816	Height:	608
Duration:	00:09:03	Size:	6.7 MB

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Pre-requisite

Surfaces and Orbitals

Assignment

Code files

Codefiles-Database/Adenosine.mol
Codefiles-Database/Alanine.mol
Codefiles-Database/Alpha-D-glucopyranose.mol
Codefiles-Database/

Script

Timed Script

Slides

Slides-Databese/Database-21Mar.tex
Slides-Databese/Gchempaint-structures.gchempaint
Slides-Databese/Database-21Mar.pdf
Slides-Databese/

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