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Superimposing Structures - English

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Outline:
Load a model of Lactic acid from the database.
Assign the R/S configuration using Cahn-Ingold-Prelog priority rules.
Append the model of R-Lactic acid using script command.
Separate the models using modelkit menu.
Translate and rotate models on the panel.
Superimpose the models manually by dragging the model.
Superimpose models using the Compare command.
About RMSD score.
Analyze the superposition using RMSD score.
Load models of D-glucose, D-altrose, and D-mannose on Jmol Panel.
Compare RMSD scores for the superimposition.
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Pre-requisite

Bond Rotation in Jmol

  Assignment

Code files

  • Code-files-Superimposing/
  • Code-files-Superimposing/S-lacticacid.mol
  • Code-files-Superimposing/D-glucose.mol
  • Code-files-Superimposing/D-altrose.mol
  • Code-files-Superimposing/D-mannose.mol

Script

Slides

  • Superimpose-Slides/
  • Superimpose-Slides/st-logo-new.png
  • Superimpose-Slides/Superimpose.tex
  • Superimpose-Slides/Carbohydrates.png
  • Superimpose-Slides/Lacticacid-en.png
  • Superimpose-Slides/Superimpose.pdf

  Additional reading material