Superimposing Structures - English
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- Jmol Application Tutorials - English
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Overview of Jmol Application -
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Introduction to Jmol Application -
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Create and edit molecular models -
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Modify Display and View -
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Measurements and Labeling -
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Interchange the Element in the 3D Model -
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Script Console and Script Commands -
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Display Lone Pair of Electrons -
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Structures from Database -
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Bond Rotation in Jmol -
Superimposing Structures -
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Proteins and Macromolecules -
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3D Models of Enzymes -
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Symmetry and Point Groups -
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Animation using Script Commands -
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Simulated NMR Spectrum using Jmol -
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Creating a Basic JSmol Integrated Web Page -
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Editing the JSmol Integrated Web Page
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Outline:
Load a model of Lactic acid from the database. Assign the R/S configuration using Cahn-Ingold-Prelog priority rules. Append the model of R-Lactic acid using script command. Separate the models using modelkit menu. Translate and rotate models on the panel. Superimpose the models manually by dragging the model. Superimpose models using the Compare command. About RMSD score. Analyze the superposition using RMSD score. Load models of D-glucose, D-altrose, and D-mannose on Jmol Panel. Compare RMSD scores for the superimposition.
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