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Biopython is a collection of Python tools for computational biology and bioinformatics. Biopython contains modules and classes to represent protein sequences, nucleic acid sequences and sequence annotations. Biopython tools can perform common operations such as transcription, translation, obtain complements, reverse complements, parsing, running BLAST etc. We can use Biopython modules to access online databases such as NCBI. Biopython modules can also be used for sequence alignment, phylogenetics, sequence motifs, protein structure etc. Read more


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Foss : Biopython - English

Outline: Important features of Biopython. Information regarding download and installation on Linux Operating System. Create a sequence object for the given DNA strand. Transcription of t..

Basic

Foss : Biopython - English

Outline: 1. Generate a random DNA sequence. 2. Slice the DNA sequence at specified locations. 3. Join the two sequences together to form a new sequence (concatenate). 4. Find t..

Basic

Foss : Biopython - English

Outline: Download FASTA and GenBank files from NCBI database website. Parse data files using functions in Bio.SeqIO module. Use parse function (Bio.SeqIO. Parse()) to extract information ..

Basic

Foss : Biopython - English

Outline: Create Sequence Record Objects. Write sequence files using write function of Sequence Input/Output module( Bio.SeqIO. write()). Convert between file formats. Sort records in a f..

Basic

Foss : Biopython - English

Outline: Run BLAST for the query sequence over internet through NCBI BLAST service. Use qblast function in NCBIWWW module to run blast for a nucleotide sequence. Save the output xml file ..

Basic