The Tutorials in this series are created using Gnuplot 5.2.7, Gnuplot 5.2.6 on Windows 10 64 bit OS, Debian Linux OS 9.3 and Ubuntu Linux 16.04 OS. Gnuplot is a program for plotting graphs using terminal command lines. It is available for many platforms and is free of cost to download, install and use. It is one of the best liked plotting software in scientific community. The program supports, interactive plotting, generates hard copy plots of variety of user friendly file formats for printing and sharing. The software can also generate ASCII plots from remote servers. The software can generate, 2D graphs, 3D surfaces, histograms, web scripting and data fitting. Heat maps, transparency setting, multiplot mode, various symbol styles, graph color, line color and other formatting options are available for users of gnuplot. The program can handle advanced mathematics functions, transforms, axis operations and animations. A large collection of user friendly scripts exist online along with user forums. Gnuplot is actively developed for decades. Read more
Foss : Gnuplot - English
Outline: Plot datasets from a file Choose x and y data from a multi-column file Specify legend title in the plot Set and unset logarithmic scale for y-axis Set line width in the plot S..
Outline: Generate a 3D plot with splot command Rotate the graph to change the viewing angle Color the two sides of the surface differently Use set isosamples command to define a fine gri..
Outline: Set gnuplot to multiplot mode Define the position and size of each plot on the canvas Perform an iterative modification of the script Change the graph properties step by step I..
Outline: Add error bars to a plot Steps in fitting the data to an equation Define an equation to fit a given set of data points Set initial guess value for the coefficients in the equati..
Outline: Write a gnuplot script incorporating Latex symbols in gnuplot Incorporate superscript and subscript in the latex symbols Learn the pause command Show Latex symbols in gnuplot gr..
Outline: Plot string data on x-axis Specify xtics position for the string label Generate statistical summary with stats command About the statistical summary generated by gnuplot Make a..
Outline: Run gnuplot commands using a Perl script Generate statistical summary for multiple input data files from gnuplot using Perl script Save the statistical summary files with differe..
Foss : Grace - English
Outline: Visit the official website of Grace Familiarize with downloadable online example files Open an example image output Browse through the list of programs which use Grace Forks o..
Outline: Install Grace in Ubuntu Linux 16.04 Open Grace using the Terminal Open Grace via search your computer form Resize the graph panel About format for XY dataset About a row heade..
Outline: Download QtGrace for Windows User preference setup Resize the graph panel Open an ASCII XY dataset Learn about dataset format Set autoscale when reading a dataset Load a data..
Outline: Open a Grace project Change the line style and width of the line Add symbol style to the plot Adjust symbol size in the plot Change the line color Adjust global limits of th..
Outline: Plot a bar chart Open a dataset and plot a bar chart Label x-axis with string data About graph number G(0) and set number S(0) Edit a dataset using the dataset editor spreadshe..
Outline: About Linear data fitting Regression option with preset equations About Linear regression options in Grace Meaning of G(0), S(0) nomenclature Run data fitting algorithm About ..
Outline: Add multiple graph panels to the canvas About set operations Remove a dataset from a graph panel Steps for fitting data Choose an equation from visual inspection Write an exp..
Foss : Gromacs - English
Outline: About Gromacs official website Install Ubuntu 20.04 LTS app for Windows OS Install programs needed to build Gromacs Install make, gcc, build essential and cmake Download Gromac..
Outline: Register on VMD website for download VMD Install VMD 1.9.3 on Ubuntu Linux 20.04 OS Install VMD 1.9.3 on Windows 10 OS Open a PDB file in VMD Rotate molecule Change depth cue ..
Outline: About a PDB file PDB website Search and navigate the PDB website View biomolecule structure in the PDB website About FASTA file format Primary sequence of a protein Header de..
Outline: Flow chart for MD run for proteins in a solvent box from Gromacs manual Delete water molecules present in the input pdb file About pdb2gmx command and syntax About force field o..
Outline: About solvent molecule files that can be added to the system Solvate command View the solvated system in VMD About mdp file About grompp command Generate tpr binary file Use ..
Outline: About unfavorable interactions after the addition of solvent and ions View the solvated system in VMD Set up energy minimization mdrun command Verbose option to view the proces..