The tutorials in series are created using Avogadro version 1.1.1 on Ubuntu 14.04. Avogadro is a free and open source, advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, bioinformatics, etc. It offers flexible high quality rendering. Read more
Foss : Avogadro - English
Outline: About Avogadro software Download and installation of Avogadro in Windows OS Download and installation of Avogadro in Mac OSX Download and installation of Avogadro in Ubuntu Linu..
Outline: Import Molecules from chemical database Rotate the molecules Zoom in and zoom out the structures Build molecules on the Panel using Draw tool Set up force field and optimize th..
Outline: Add and delete atoms Add and delete bonds Rotate bonds and change length of the bond Change hydrogen to methyl group Copy, paste and join structures.
Outline: View properties of the molecule Label the atoms with partial charge Create Van der waals surface Color the surface according to the electrostatic potential energies.
Outline: How to configure Avogadro Show Intermolecular hydrogen bonding Show Intramolecular hydrogen bonding Measure length of hydrogen bonds Show Force display type in water molecul..
Outline: Proton transfer in compounds by changing pH values Load crystal structures from Crystal library Explain about Miller indices and planes Show various Miller planes in crystal sy..
Outline: Define stereoisomerism Define conformational isomerism Show conformations of 1,2-dichloroethane Show conformations of cyclohexane Define geometrical isomerism Demonstrate geom..
Outline: * Prepare input files for computational chemistry programmes such as: GAMESS, Gaussian, MOPAC, NWChem etc. * View Molecular orbitals and calculated IR spectrum using output..