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Outline:About input file for MD Timescale of motions Time taken for MD Run MD for 1ns About Output files About Data Analysis, PCA, energetics About xtc trajectory file View trajectory with xtc file in VMD About RMSD trajectory tool and RMSD plot Align the structure in a frame with a reference molecule
About input file for MD Timescale of motions Time taken for MD Run MD for 1ns About Output files About Data Analysis, PCA, energetics About xtc trajectory file View trajectory with xtc file in VMD About RMSD trajectory tool and RMSD plot Align the structure in a frame with a reference molecule
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