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Visualization With VMD - English

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Outline:

Load and play a trajectory file in VMD Settings to play and view trajectory About Timestep in Drawing method Display select specified frames Create new representation Notice the moved chloride ions during energy minimization About fast and slow movement of the molecules in the system Movie maker to create movie Open multiple gro files About Tkl/Tk console in VMD Align the two protein molecules Select part of the molecule for alignment

Width:	860	Height:	640
Duration:	00:13:46	Size:	9 MB

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Pre-requisite

Temperature and Pressure Equilibration

Assignment

Code files

codefile-vmd-trajectory/
codefile-vmd-trajectory/1AKI.pdb
codefile-vmd-trajectory/first.gro
codefile-vmd-trajectory/npt.gro
codefile-vmd-trajectory/npt.trr

Script

Slides

st-logo-new.png
visualization.pdf
visualization.tex

Additional reading material

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