Search Tutorials
The Tutorials in this series are created using Grace v 5.1.25 on Windows 10 OS, Ubuntu Linux 16.04 OS. Xmgrace or Grace, is a program for plotting graphs, with a clickable GUI to set graph properties. It is a WYSIWYG(what you see is what you get) 2D plotting tool. The program is free to download, install and use. The program supports, interactive plotting to generate, 2D graphs, bar charts and execute data fitting routines. Multiple graphs can be plotted on the same canvas. Various symbols styles and formatting options can be included in the plots. Grace is one of the best liked plotting software in scientific community. QtGrace fork, provides a binary for Windows OS using Qt-SDK tool. Back-end plotting of many popular scientific and engineering software use Grace. More details are available in the website More details are available on this website: http://plasma-gate.weizmann.ac.il/Grace/ Read more
Foss : Grace - English
Outline: Open a Grace project Change the line style and width of the line Add symbol style to the plot Adjust symbol size in the plot Change the line color Adjust global limits of th..
Basic
Foss : Grace - English
Outline: Plot a bar chart Open a dataset and plot a bar chart Label x-axis with string data About graph number G(0) and set number S(0) Edit a dataset using the dataset editor spreadshe..
Basic
Foss : Grace - English
Outline: About Linear data fitting Regression option with preset equations About Linear regression options in Grace Meaning of G(0), S(0) nomenclature Run data fitting algorithm About ..
Intermediate
Foss : Grace - English
Outline: Add multiple graph panels to the canvas About set operations Remove a dataset from a graph panel Steps for fitting data Choose an equation from visual inspection Write an exp..
Intermediate
Foss : Gromacs - English
Outline: About Gromacs official website Install Ubuntu 20.04 LTS app for Windows OS Install programs needed to build Gromacs Install make, gcc, build essential and cmake Download Gromac..
Basic
Foss : Gromacs - English
Outline: Register on VMD website for download VMD Install VMD 1.9.3 on Ubuntu Linux 20.04 OS Install VMD 1.9.3 on Windows 10 OS Open a PDB file in VMD Rotate molecule Change depth cue ..
Basic
Foss : Gromacs - English
Outline: About a PDB file PDB website Search and navigate the PDB website View biomolecule structure in the PDB website About FASTA file format Primary sequence of a protein Header de..
Basic
Foss : Gromacs - English
Outline: Flow chart for MD run for proteins in a solvent box from Gromacs manual Delete water molecules present in the input pdb file About pdb2gmx command and syntax About force field o..
Basic
Foss : Gromacs - English
Outline: About solvent molecule files that can be added to the system Solvate command View the solvated system in VMD About mdp file About grompp command Generate tpr binary file Use ..
Intermediate
Foss : Gromacs - English
Outline: About unfavorable interactions after the addition of solvent and ions View the solvated system in VMD Set up energy minimization mdrun command Verbose option to view the proces..
Intermediate
Foss : Gromacs - English
Outline: About temperature and pressure of the system Need for equilibration before the start of the MD simulation nvt.mdp and npt.mdp files Commands for NVT or temperature equilibration..
Intermediate
Foss : Gromacs - English
Outline: Load and play a trajectory file in VMD Settings to play and view trajectory About Timestep in Drawing method Display select specified frames Create new representation Notice ..
Intermediate
Foss : Gromacs - English
Outline: About input file for MD Timescale of motions Time taken for MD Run MD for 1ns About Output files About Data Analysis, PCA, energetics About xtc trajectory file View trajecto..
Advanced
Foss : GUI in Scilab - English
Outline: Learn about GUI and its benefits. What are objects? What is a pushbutton? What is a callback function? Use of a graphic window. About figure function. About ui..
Basic
Foss : GUI in Scilab - English
Outline: *Learn about GUI Builder Toolbox, *Install GUI Builder Toolbox, *About GUIBuilder Palette, *Adding a pushbutton, *What is Tag, *What is String, *Adding a Pushbutton to a GUI ..
Basic
Foss : GUI in Scilab - English
Outline: *About an Edit box, *About a Text box, *How to open an existing GUI, *Adding Tag and String, *Adding an Edit box to GUI, *Adding a Text box to GUI, *About string command, *..
Basic
Foss : GUI in Scilab - English
Outline: *How to change the Background color, *How to change the Font angle of the string, *How to change the Font size of the string, *How to change the Font weight of the string, *How..
Basic
Foss : GUI in Scilab - English
Outline: * Learn about an exponent calculator, * Adding Edit box for base to take user input, * Adding Edit box for exponent to take user input, * Adding a Text box to display the output..
Basic
Foss : GUI in Scilab - English
Outline: *About Linear equation of a line, *What are Axes, *Use of Edit box for taking user input for a, b and c, *Use of Text box for displaying the slope and y-intercept, *Use of Push..
Basic
Foss : GUI in Scilab - English
Outline: * Learn about basic plotting in GUI * About Checkbox, * Adding Checkbox for sine function, * Adding Checkbox for cosine function, * Adding an Axes to display the response of a ..
Basic
